Samuel Schmidgall

Hello there, and welcome to my website! My name is Samuel Schmidgall and I’m a researcher & engineer focused on applying AI to the field of medicine and medical robotics.

I am a 2nd year PhD student @ Johns Hopkins University in Electrical and Computer Engineering. I’m jointly advised by Rama Chellappa and Axel Krieger in the Intelligence for Engineering and Medicine Lab (AIEM) and the Intelligent Medical Robotic Systems and Equipment Lab (IMERSE) toward building autonomous surgical robots and medical language models. I’m very grateful to have received support from the NSF Graduate Research fellowship (NSF GRFP).

I was previously an intern at Stanford during Summer 2024 and am currently an intern at AMD as part of the generative AI team.

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Research

Some of my favorite papers are highlighted.

Surgical Robot Transformer (SRT): Imitation Learning for Surgical Subtasks
Ji Woong Kim, Tony Zhao, Samuel Schmidgall, Anton Deguet, Marin Kobilarov, Chelsea Finn, Axel Krieger
8th Annual Conference on Robot Learning (CoRL), 2024 (Oral presentation, 4.3%)
bibtex

Here, we introduce the Surgical Robot Transformer (SRT). We explore whether surgical manipulation tasks can be learned on the da Vinci robot via imitation learning. We demonstrate our findings through successful execution of three surgical tasks, including tissue manipulation, needle handling, and knot-tying.

General-purpose foundation models for increased autonomy in robot-assisted surgery
Samuel Schmidgall, Ji Woong Kim, Alan Kuntz, Ahmed Ezzat Ghazi, Axel Krieger
Nature Machine Intelligence, 2024
bibtex

This perspective aims to provide a path toward increasing robot autonomy in robot-assisted surgery through the development of a multi-modal, multi-task, vision-language-action model for surgical robots.

SurGen: Text-Guided Diffusion Model for Surgical Video Generation
Joseph Cho, Samuel Schmidgall, Cyril Zakka, Mrudang Mathur, Rohan Shad, William Hiesinger
arXiv preprint arXiv:2408.14028, 2024
bibtex

This paper introduces SurGen, a text-guided diffusion model tailored for surgical video synthesis, producing the highest resolution and longest duration videos among existing surgical video generation models.

AgentClinic: a multimodal agent benchmark to evaluate AI in simulated clinical environments
Samuel Schmidgall, Rojin Ziaei, Carl Harris, Eduardo Reis, Jeffrey Jopling, Michael Moor
arXiv preprint arXiv:2405.07960, 2024
bibtex

AgentClinic turns static medical QA problems into agents in a clinical environment in order to present a more clinically relevant challenge for multimodal language models.

GP-VLS: A general-purpose vision language model for surgery
Samuel Schmidgall*, Joseph Cho*, Cyril Zakka, William Hiesinger
arXiv preprint arXiv:2407.19305, 2024
bibtex

This paper introduces GP-VLS, a general-purpose vision language model for surgery that integrates medical and surgical knowledge with visual scene understanding.

Addressing and mitigating cognitive bias in medical language models.
Samuel Schmidgall, Carl Harris, Ime Essien, Daniel Olshvang, Tawsifur Rahman, Ji Woong Kim, Rojin Ziaei, Jason Eshraghian, Peter Abadir, Rama Chellappa
NPJ Digital Medicine, 2024
bibtex

The addition of simple cognitive bias prompts significantly degrades performance. We introduce BiasMedQA to evaluate bias robustness on medical QA problems, and demonstrate mitigation techniques.

Surgical Gym: A high-performance GPU-based platform for reinforcement learning with surgical robots
Samuel Schmidgall, Jason Eshraghian, Axel Krieger
2024 IEEE International Conference on Robotics and Automation (ICRA), 2024
bibtex

Surgical Gym is an open-source high performance platform for surgical robot learning where both the physics simulation and reinforcement learning occur directly on the GPU.

Brain-inspired learning in artificial neural networks: a review
Samuel Schmidgall, Rojin Ziaei, Jascha Achterberg, Louis Kirsch, Pardis Hajiseyedrazi, Jason Eshraghian
APL Machine Learning, 2024
bibtex

Comprehensive review of current brain-inspired learning representations in artificial neural networks.

Robots learning to imitate surgeons—challenges and possibilities
Samuel Schmidgall, Ji Woong Kim, Axel Krieger
Nature Reviews Urology, 2024
bibtex

Autonomous surgical robots have the potential to transform surgery and increase access to quality health care. Advances in artificial intelligence have produced robots mimicking human demonstrations. This application might be feasible for surgical robots but is associated with obstacles in creating robots that emulate surgeon demonstrations.

General surgery vision transformer: A video pre-trained foundation model for general surgery
Samuel Schmidgall, Ji Woong Kim, Jeffrey Jopling, Axel Krieger
arXiv preprint arXiv:2403.05949, 2024
bibtex

This paper introduces large video dataset of surgery videos, a general surgery vision transformer (GSViT) pretrained on surgical videos, code and weights for procedure-specific fine-tuned versions of GSViT across 10 procedures.

Trainees’ perspectives and recommendations for catalyzing the next generation of NeuroAI researchers
Andrea I. Luppi, Jascha Achterberg, Samuel Schmidgall, Isil Poyraz Bilgin, Peer Herholz, Benjamin Fockter, Andrew Siyoon Ham, Sushrut Thorat, Rojin Ziaei, Filip Milisav, Alexandra M. Proca, Hanna M. Tolle, Laura E. Suárez, Paul Scotti, Helena M. Gellersen
Nature Communications, 2024
bibtex

This paper outline challenges and training needs of junior researchers working across AI and neuroscience. We also provide advice and resources to help trainees plan their NeuroAI careers.

Learning a Library of Surgical Manipulation Skills for Robotic Surgery
Ji Woong Kim, Samuel Schmidgall, Axel Krieger, Marin Kobilarov
7th Conference on Robot Learning (CoRL), Bridging the Gap between Cognitive Science and Robot Learning in the Real World: Progresses and New Directions, 2023
bibtex

Preliminary progress towards learning a library of surgical manipulation skills using the da Vinci Research Kit (dVRK).

Language models are susceptible to incorrect patient self-diagnosis in medical applications
Rojin Ziaei, Samuel Schmidgall
NeurIPS 2023 Deep Generative Models for Healthcare Workshop, 2023
bibtex

We show that when a patient proposes incorrect bias-validating information, the diagnostic accuracy of LLMs drop dramatically, revealing a high susceptibility to errors in self-diagnosis.

Synaptic motor adaptation: A three-factor learning rule for adaptive robotic control in spiking neural networks
Samuel Schmidgall, Joseph Hays
Proceedings of the 2023 International Conference on Neuromorphic Systems, 2023
bibtex

This paper introduces the Synaptic Motor Adaptation (SMA) algorithm, a novel approach to achieving real-time online adaptation in quadruped robots through the utilization of neuroscience-derived rules of synaptic plasticity with three-factor learning.

Meta-SpikePropamine: Learning to learn with synaptic plasticity in spiking neural networks
Samuel Schmidgall, Joseph Hays
Frontiers in Neuroscience, 2023
bibtex

We introduce a bi-level optimization framework that seeks to both solve online learning tasks and improve the ability to learn online using models of plasticity from neuroscience.

Biological connectomes as a representation for the architecture of artificial neural networks
Samuel Schmidgall, Catherine Schuman, Maryam Parsa
Proceedings of the 2023 AAAI Conference on Artificial Intelligence "Systems Neuroscience Approach to General Intelligence" Workshop, 2023
bibtex

We translate the motor circuit of the C. Elegans nematode into artificial neural networks at varying levels of biophysical realism and evaluate the outcome of training these networks on motor and non-motor behavioral tasks.

Locked fronts in a discrete time discrete space population model.
Matthew Holzer, Zachary Richey, Wyatt Rush, Samuel Schmidgall
Journal of Mathematical Biology., 2023
bibtex

We construct locked fronts for a particular piecewise linear reproduction function. These fronts are shown to be linear combinations of exponentially decaying solutions to the linear system near the unstable state.

SpikePropamine: Differentiable Plasticity in Spiking Neural Networks.
Samuel Schmidgall, Julia Ashkanazy, Wallace Lawson, Joseph Hays
Frontiers in Neurorobotics., 2021
bibtex

We introduce a framework for simultaneously learning the underlying fixed-weights and the rules governing the dynamics of synaptic plasticity and neuromodulated synaptic plasticity in SNNs through gradient descent.

Optimal Localized Trajectory Planning of Multiple Non-holonomic Vehicles
Anton Lukyanenko, Heath Camphire, Avery Austin, Samuel Schmidgall, Damoon Soudbakhsh
2021 IEEE Conference on Control Technology and Applications (CCTA), 2021
bibtex

We present a trajectory planning method for multiple vehicles to navigate a crowded environment, such as a gridlocked intersection or a small parking area.

Self-Constructing Neural Networks through Random Mutation
Samuel Schmidgall
ICLR 2021 Never-Ending Reinforcement Learning Workshop, 2021
bibtex

This paper presents a simple method for learning neural architecture through random mutation.

Adaptive Reinforcement Learning through Evolving Self-Modifying Neural Networks
Samuel Schmidgall
Proceedings of the 2020 Genetic and Evolutionary Computation Conference Companion., 2020
bibtex

We show quadrupedal agents evolved using self-modifying plastic networks are more capable of adapting to complex meta-learning learning tasks, even outperforming the same network updated using gradient-based algorithms while taking less time to train.


Original source code.